University Catalog

BE 1000. UNDERGRADUATE RESEARCH. 0 Hours.

Freshman level undergraduate research. Prerequisite: Departmental good standing and permission of instructor. May be taken a maximum of 3 times.

BE 1105. MEDICAL APPLICATIONS OF ENGINEERING. 1 Hour.

Introduction to basic biology and engineering problems associated with living systems and health care delivery. Examples will be used to illustrate how basic concepts and tools of science & engineering can be brought to bear in understanding, mimicking and utilizing biological processes.

BE 1325. INTRODUCTION TO BIOENGINEERING. 3 Hours.

Topics include introduction to basic engineering principles and quantitative methods, their applications in analyzing and solving problems in biology and medicine. Also includes new trends in the development of bioengineering and biotechnology.

BE 2000. UNDERGRADUATE RESEARCH. 0 Hours.

Sophomore level undergraduate research. Prerequisite: Departmental good standing and permission of instructor. May be taken a maximum of 3 times.

BE 3000. UNDERGRADUATE RESEARCH. 0 Hours.

Junior level undergraduate research. Prerequisite: Departmental good standing and permission of instructor. May be taken a maximum 3 times.

BE 3195. INTERNSHIP IN BIOENGINEERING. 1 Hour.

Students receive training in a bioengineering company or a hospital to gain firsthand industrial or clinical engineering experience. The company or hospital assign projects and a faculty member monitors the student's progress. Prerequisite: Completion of at least 70 undergraduate credit hours in BE and good standing in the undergraduate program. Permission of Undergraduate Academic Advisor.

BE 3295. INTERNSHIP IN BIOENGINEERING. 2 Hours.

Students receive training in a bioengineering company or a hospital to gain first hand industrial or clinical engineering experience. The company or hospital assigns projects and a faculty member monitors the student's progress. Prerequisite: Completion of at least 70 undergraduate credit hours in BE and good standing in the undergraduate program. Permission of Undergraduate Academic Advisor.

BE 3301. CELL PHYSIOLOGY FOR BIOENGINEERS. 3 Hours.

This course will cover principles of molecular omics (i.e., genomics, transcriptomics, proteomics and synthetic biology); the field of molecular bioengineering and processes involving inducible transcription and chimeric proteins; the composition of cell membranes, ion transport and the application of optogenetics in cell physiology regulation; the way cells communicate and integrate signals and translate them in intracellular metabolic cascades through the understanding of phosphoproteomics, energy metabolism, metabolomics, cellular motility, and molecular motors; the processes involved in cell proliferation, abnormal cell division dysregulation in cancer, and nanotechnology techniques for tumor treatment. Prerequisite: BE 3320, BE 3380, BE 3415.

BE 3310. BIOMECHANICS AND FLUID FLOW WITH COMPUTATIONAL LABORATORY. 3 Hours.

Following an introduction to the basics of solid, fluid mechanics, student learn the fundamental behavior of various biological materials, flow properties of blood, viscoelastic properties of cells, tissue matrix, as well as their roles in human physiology at normal and disease states. Examples also include the design aspects of medical prosthetic devices. The course will cover biomechanics across a wide range of scales from organism, organ, tissue, cell and to protein levels. Students learn computational modeling to formulate and solve bioengineering problems. Prerequisite: BE 3320, BE 3380, BE 4368, BE 4325.

BE 3317. LINEAR SYSTEMS IN BIOENGINEERING. 3 Hours.

Time-domain transient analysis, convolution, Laplace Transforms, Fourier Series, Transforms and their applications, transfer functions, signal flow diagrams, Bode plots, stability criteria, sampling, filter designs, and Discrete-time signals and systems. Examples with applications in bioengineering will be emphasized. Prerequisite: Grade C or better in PHYS 1444, MATH 3319, BIOL 1442, CHEM 1442, CSE 1311, ENGR 1300, BE 1105, BE 1325.

BE 3320. MEASUREMENT LABORATORY. 3 Hours.

Hands-on experiments with use of transducers used for chemical, mechanical, electrical, and thermal biomedical measurements. Computer-based means of converting analog transducer output into digital form. Analysis of experimentally collected data including error analysis, repeatability, resolution, and functional specifications. Prerequisite: PHYS 1444, MATH 3319, BIOL 1442, CHEM 1442, CSE 1311, ENGR 1300, BE 1105, BE 1325.

BE 3323. INTRODUCTION TO BIOPHOTONICS. 3 Hours.

Introduction to properties of light, light-cell/tissue interactions, optical techniques, and optical instrumentation in the context of biophotonic medical applications. Topics that will be covered include fundamental properties of optical wave fields, basic properties and characterization of laser sources and detectors used in modern biomedicine, interferometery, linear and nonlinear light-tissue interactions exploited for biomedical imaging and sensing applications, and spectroscopy. Prerequisite: BIOL 1442, CHEM 1442, MATH 3319, PHYS 1444, and BE 3415.

BE 3325. FLUORESCENCE MICROSCOPY. 3 Hours.

Introduction to the anatomy of fluorescence microscopy and the physical principles of its operation; confocal and multi-photon microscopy; molecular imaging applications based on Forster Resonance Energy Transfer (FRET), Fluorescence Lifetime Imaging (FLIM), Fluorescence Correlation Spectroscopy (FCS), Fluorescence Recovery After Photobleaching (FRAP) and Total Internal Reflection Fluorescence (TIRF) Microscopy. Prerequisite: BE 4382, BE 3344, BE 3301, Consent of Undergraduate Advisor.

BE 3327. TISSUE OPTICS. 3 Hours.

Introduction to the science and technology behind tissue optical imaging systems and their design requirements for different clinical applications; diffuse optical tomography; fluorescence tomography; bioluminescence tomography; multi-modality imaging. Prerequisite: BE 4382, BE 3344, BE 3301, Consent of Undergraduate Advisor.

BE 3343. MATLAB AND APPLICATIONS FOR BIONENGINEERS. 3 Hours.

This course consists of two parts: the first part teaches students how to use MATLAB for engineering computation, quantitative analysis, scientific plotting/graphing presentation, and numerical modeling in solving real-world problems. After enabling students to generate arrays, files, functions, and to write MATLAB programs, the course will focus on using MATLAB for bioengineering applications, including 2D and 3D graphing for biological images, data processing for time-varying signals, and 2D Fourier transform for medical image processing. A variety of examples often encountered in the biological, biomedical engineering field will be used as class demonstration, presentation and project assignments. Prerequisite: BE 4382, BE 3344, BE 3301, or Consent of Undergraduate Advisor.

BE 3344. BIOINSTRUMENTATION. 3 Hours.

Fundamental principles of bioinstrumentation, including operational amplifiers and instrumentation amplifiers; measurements of biopotentials; signals and noise in biological systems; mechanical transducers; resistive, inductive, capacitive transducers; measurement of temperature, blood pressure and flow; electrical safety. Prerequisite: BE 3320, BE 3380, EE 2440, BE 4325, BE 3352 or consent of Undergraduate Advisor.

BE 3346. MEDICAL IMAGING. 3 Hours.

This course introduces basic medical imaging modalities, including X-ray Computed Tomography (CT), Nuclear Medicine Imaging (PET and SPECT), Magnetic Resonance Imaging (MRI), and image-guided interventions. Through this course, the students will learn fundamental knowledge on how medical images are obtained and how they can be used for diagnosis, therapy, and surgery. Prerequisite: BE 3320, BE 3380, EE 2440, BE 4325, BE 3352.

BE 3352. DIGITAL PROCESSING OF BIOLOGICAL SIGNALS. 3 Hours.

Fundamental techniques for extraction of useful information from signals acquired from biological systems. Topics include time and frequency domain analysis, cross correlation, spectrum analysis, and convolution. Design of finite impulse response (FIR) and infinite impulse response (IIR) filters for processing biological signals are described. Examples include cardiac, respiratory, and biomechanical movements. Prerequisite: PHYS 1444, MATH 3319, BIOL 1442, CHEM 1442, CSE 1311, ENGR 1300, BE 1105, BE 1325 and BE 3415.

BE 3367. CELL CULTURE AND DRUG DELIVERY LABORATORY. 3 Hours.

This course will cover techniques commonly used in tissue engineering and biomaterial research, including culture media preparation, cell culture/subculture, degradable scaffold, their modification, histological staining, and imaging analyses. The course will also include development of systems for delivery of pharmaceutical agents used for treating different diseases; an understanding of the underlying pharmacokinetics principles is emphasized. Prerequisite: BE 3320, BE 3380, BE 4368, BE 4325.

BE 3372. DRUG DELIVERY. 3 Hours.

This class focuses on the development, design, and application of controlled and targeted drug delivery systems including transdermal, inhalation, drug eluting stents, stimulated-drug, as well as microparticles and nanoparticles for controlled drug delivery. Principles of drug delivery, targeting, modification, distribution and diffusion will be discussed. Prerequisite: PHYS 1444, BIOL 1442, MATH 3319, CHEM 1442 and BE 3415.

BE 3380. HUMAN PHYSIOLOGY IN BE. 3 Hours.

An introduction to human physiology emphasizing biomedical engineering related topics. The course focuses on understanding basic function with the relationships on the cellular as well as organ level in both healthy and diseased states. Prerequisite: PHYS 1444, MATH 3319, BIOL 1442, CHEM 1442, CSE 1311, ENGR 1300, BE 1105, and BE 1325.

BE 3395. INTERNSHIP IN BIOENGINEERING. 3 Hours.

Students receive training in a bioengineering company or a hospital to gain first hand industrial or clinical engineering experience. The company or hospital assigns projects and a faculty member monitors the student's progress. Prerequisite: Completion of at least 70 undergraduate credit hours in BE and good standing in the undergraduate program. Permission of Undergraduate Academic Advisor.

BE 3415. FUNDAMENTALS OF BIO-MOLECULAR ENGINEERING. 4 Hours.

Introducing the fundamentals of molecular structure of life, topics include the structure of the atom, the chemical bonding, the energetic rationale to create compounds and functional groups, and their roles in chemical reactions. Topics also include complex molecular systems such as carbohydrates, proteins, DNA, lipids and the synthesis of biopolymer. Methods and technology used for their characterization: spectroscopy, polarimetry, nuclear magnetic resonance, and other techniques will be introduced. Applied technology of recombinant DNA and PCR will be introduced. The course also offers an introduction to enzyme chemistry, the metabolic pathways for the carbohydrates and lipids. Prerequisite: Grade C or better in MATH 2425, BIOL 1442, CHEM 1442, BE 1105, BE 1325.

BE 4000. UNDERGRADUATE RESEARCH. 0 Hours.

Senior level undergraduate research. Prerequisite: Departmental good standing and permission of instructor. May be taken a maximum of 3 times.

BE 4191. DIRECTED RESEARCH IN BIOENGINEERING. 1 Hour.

Student participates in a research project under the individual instruction of a faculty supervisor.

BE 4291. DIRECTED RESEARCH IN BIOENGINEERING. 2 Hours.

Student participates in a research project under the individual instruction of a faculty supervisor.

BE 4300. SPECIAL TOPICS IN BIOENGINEERING. 3 Hours.

A study of selected topics in Bioengineering. May be repeated when topics vary. Prerequisite: Consent of instructor and undergraduate advisor.

BE 4324. BIOMEDICAL OPTICS LABORATORY. 3 Hours.

The primary objective of this course is to provide students hands-on experience with fundamental optical techniques and instrumentation used in modern biomedical research and applications. The skills learned will be valuable to anyone who intends to work in an experimental setting that requires working knowledge of optical instrumentation and techniques. The course is divided into ten core lab modules that cover topics ranging from basic optical techniques to advanced imaging and spectroscopy techniques. Prerequisites: BE 3320, BE 3380, and EE 2440.

BE 4325. FUNDAMENTALS OF BIOENGINEERING. 3 Hours.

Topics cover fundamentals of biosensors, bio-signal processing, and bioinstrumentation. An introduction to various imaging modalities such as ultrasound, magnetic resonance, optical tomography, and x-ray radiography is also presented. Other bioengineering topics may be included as time allows or as is appropriate. Prerequisite: PHYS 1444, MATH 3319, BIOL 1442, CHEM 1442, CSE 1311, ENGR 1300, BE 1105, BE 1325 and BE 3415.

BE 4326. TISSUE ULTRASOUND-OPTICAL IMAGING. 3 Hours.

This course will introduce the fundamental principles of ultrasound and optical related imaging techniques, such as ultrasonic, tissue optical, and photoacoustic imaging techniques. Some topics related to the new progresses and applications in the related fields will be introduced. Students are expected to know the principles of these imaging techniques, and use mathematical, numerical simulation and experimental methods to understand these technologies and their biomedical applications. Prerequisite: BE 3344, BE 4382, or Consent of Undergraduate Advisor.

BE 4329. NEURAL ENGINEERING. 3 Hours.

This course consists of both lecture/discussion and laboratory. Lecture topics include central and peripheral nervous system injury and regeneration, brain/machine interfacing, primary culture of neural cells, neuroinflammatory and neurodegenerative disease. Laboratories include embryonic and neonatal rat derived neuronal culturing, immunostaining and quantitative analysis. Prerequisites: BE 3301, BE 3367, or Consent of Undergraduate Advisor.

BE 4330. MEDICAL IMAGE PROCESSING. 3 Hours.

Principles and computational methods in digitally processing medical images are presented. Topics include image reconstruction, two and three dimensional visualization, image registration, quantitative image analysis, image enhancement, and statistical processing methods including Monte Carlo methods. Prerequisites: BIOL 1442, CHEM 1442, MATH 3319, and PHYS 1444.

BE 4331. POLYMERS IN BIOMEDICAL ENGINEERING. 3 Hours.

This is a foundation course in polymeric biomaterial design, synthesis, characteriztion, and processing. The topics include design, surface-engineering, functionalization, characterization, as well as micro- and nano-fabrication of polymeric biomaterials. The biomedical applications of the polymeric biomaterials and their interaction with cell/tissue is discussed. Prerequisite: BIOL 1442, CHEM 1442, MATH 3319, PHYS 1444 and BE 3415.

BE 4333. NANOBIOMATERIALS. 3 Hours.

Synthesis, fabrication, characterization, and biomedical applications of nanobiomaterials. Topics include synthetic nanobiomaterials, biological nanobiomaterials (DNA nanomaterials, protein and peptide nanomaterials, etc.), biofunctionalization of nanobiomaterials, and use of nanobiomaterials in tissue engineering, drug delivery, gene delivery. Prerequisite: BIOL 1442, CHEM 1442, MATH 3319, PHYS 1444 and BE 3415.

BE 4334. INTRODUCTORY NANO AND BIOPOLYMER MATERIALS. 3 Hours.

Topics include design, fabrication, characterization, surface-engineering, functionalization of polymeric materials and their interactions with biological systems at cellular and tissue levels. Topics also include both synthetic and biological materials at nano scale for biomedical applications, including DNA, protein and peptides used in tissue engineering, drug delivery, gene therapy. Prerequisite: BE 3320, BE 3380, BE 4368, BE 4325.

BE 4337. TRANSPORT PHENOMENA IN BIOMEDICAL ENGINEERING. 3 Hours.

Principles of momentum, mass and heat transfer; description of blood flow, trans-capillary, interstitial, lymphatic fluid transport and pulmonary gas exchange. Applications in the design of blood oxygenator, dialysis devices, and strategies in drug delivery, hyperthermia treatment. Prerequisite: BE 4382, BE 3310, BE 3301, BE 3367.

BE 4345. BIOIMAGING LABORATORY. 3 Hours.

This laboratory course focuses on the use of microscopy in the life sciences, ranging from the principles of optics to the use of specialized microscopic techniques to investigate the structure and behavior of various types of cells. Students learn to use both phase and fluorescence microscopy and capture digital stills and movies with both. Students will learn how to fix and stain cells for greater exposure fo the cell details. Course will include taking and analyzing images using transmission electron microscopes and scanning electron microscopes. Prerequisite: BIOL 1442, MATH 3319, PHYS 1444, CHEM 1442, BE 3320 and BE 3415.

BE 4350. SENIOR DESIGN PROJECT I. 3 Hours.

First of two courses in design of biomedical systems and processes. Major design project in biomedical engineering, incorporating engineering standards and realistic design constraints. This course prepares students through a major design experience incorporating engineering principles and realistic constraints that include most of the following considerations: economic, environmental, sustainability, manufacturability, ethical, health and safety, and social consideration. Prerequisite: BE 4382, BE 3310, BE 3301, BE 3367, concurrent enrollment with BE 4337, IE 3301 or MATH 3316, or consent of Undergraduate Advisor.

BE 4355. SENIOR DESIGN PROJECT II. 3 Hours.

Second in two courses in design of biomedical systems. Proposals approved in BE 4350 will be completed. Teams will address, resolve limitations in the design and present final results through an oral presentation. Teams are required to submit a final project report with their design notebooks to the course instructors. Prerequisite: BE 4350, BE 4334 concurrent enrollment or consent of Undergraduate Advisor.

BE 4360. FUNDAMENTALS OF ULTRASOUND IN BIOENGINEERING. 3 Hours.

This course instructs the students in the physics of ultrasound transducers, their operation, and their biomedical applications. The material includes modeling of the interaction of acoustic waves with various types of tissue and cells. Mathematical methods for analyzing the reflected and refracted waves as well as constructing images from the waves will be covered. Prerequisite: BIOL 1442, CHEM 1442, MATH 3319, PHYS 1444 and BE 3415.

BE 4364. TISSUE ENGINEERING LECTURE. 3 Hours.

Fundamentals of cell/extracellular matrix interactions in terms of cell spreading, migration, proliferation and function; soft and hard tissue wound healing and nerve regeneration; polymer scaffolding materials and fabrication methods; cell-polymer interactions; in vitro and in vivo tissue culture and organ replacement. Prerequisite: BIOL 1442, CHEM 2322.

BE 4365. TISSUE ENGINEERING LABORATORY. 3 Hours.

Each student will be given the opportunity to perform the techniques commonly used in tissue engineering and biomaterial research. These techniques are culture media preparation, cell culture/subculture, degradable scaffold preparation, scaffold modification, histological sections and staining, and cell imaging analyses. Prerequisite: BE 3380, BE 4364.

BE 4366. PROCESS CONTROL IN BIOTECHNOLOGY. 3 Hours.

Principles and methods and measurement, data acquisition, and analysis. Application of control theory in biological systems and in biotechnology processes; control of pressure, flow, tempterature, and pH. Prerequisite: BE 4382, BE 3310, BE 3301, BE 3367.

BE 4368. AN INTRODUCTION TO TISSUE ENGINEERING AND DRUG DELIVERY. 3 Hours.

Topics include fundamentals of cell-ECM interactions, cell spreading, migration, proliferation and function; soft and hard tissue wound healing and nerve regeneration; polymer scaffolding materials and fabrication methods; cell-polymer interactions; in vitro and in vivo tissue culture and organ replacement. Students will be introduced to basic principles of pharmacokinetics and pharmacodynamics. Topics also include design and development of targeted and controlled drug delivery systems, including transdermal, inhalation, drug-eluting stents, stimulated-drug, as well as encapsulated nano and micro-particles for controlled release. Underlying principles of drug delivery, targeting, modification, distribution and diffusive transport will be discussed. Prerequisite: PHYS 1444, MATH 3319, BIOL 1442, CHEM 1442, CSE 1311, ENGR 1300, BE 1105, BE 1325 and BE 3415.

BE 4373. DRUG DELIVERY LABORATORY. 3 Hours.

This class will provide students with hands-on experience in the development of drug delivery systems such as hydrogels, scaffolds, microparticles and/or nanoparticles that can be loaded with and release pharmaceutical agents to treat various diseases. The emphasis is synthesis, characterization and pharmacokinetic studies of these drug delivery systems. Prerequisite: BIOL 1442, CHEM 1422, MATH 3319, PHYS 1444 and BE 3415.

BE 4382. LABORATORY PRINCIPLES. 3 Hours.

Introduction to fundamental biomedical engineering laboratory procedures including human studies and animal surgery; includes clinical laboratory projects, data collection, analysis, and interpretation. Prerequisite: BE 3320, BE 3380, BE 4368, BE 4325.

BE 4385. STEM CELL TISSUE ENGINEERING. 3 Hours.

Students will gain experience and expertise in stem cell culture and differentiation, and engineering stem cell-based 2D and 3D tissue constructs. Using phenotypic markers and appropriately integrating with biocompatible scaffolds, the engineered tissue constructs will be differentiated to several tissue types and functionally validated. Lectures will cover stem cells, designing scaffolds and multimodal imaging techniques. The final projects may include acquisition of big data images, data mining and development of pattern recognition algorithms. Prerequisite: BE 3301, BE 3367, or Consent of the Instructor.

BE 4390. UNDERGRADUATE RESEARCH PROJECT. 3 Hours.

Student works on an independent, individual research or development project under supervision of faculty instructor. A final project report is required. Prerequisite: Permission from Instructor.

BE 4391. DIRECTED RESEARCH IN BIOENGINEERING. 3 Hours.

Student participates in a research project under the individual instruction of a faculty supervisor.

BE 5101. SEMINAR IN BIOENGINEERING. 1 Hour.

University and guest lecturers speak on topics of current interest in the field of bioengineering.

BE 5191. DIRECTED RESEARCH IN BIOENGINEERING. 1 Hour.

Student participates in a research project under the individual instruction of a faculty supervisor.

BE 5193. MS COMPREHENSIVE EXAMINATION. 1 Hour.

Individual instruction, directed study, consultation, and comprehensive examination over coursework leading to the Thesis-Substitute Master of Science degree in bioengineering. Graded P/F/R. Required of all Thesis-Substitute MS students.

BE 5281. BEST PRACTICES IN TEACHING AND LEARNING. 2 Hours.

Introduction to approaches and activities that can facilitate learning. Students gain insight into specific challenges of teaching, basics of designing a course, role of assessments and evaluations, good presentation skills and comparisons of various engagement levels. Students teach mock lessons and are given feedback.

BE 5291. DIRECTED RESEARCH IN BIOENGINEERING. 2 Hours.

Student participates in a research project under the individual instruction of a faculty supervisor.

BE 5293. MASTERS COMPREHENSIVE EXAMINATION. 2 Hours.

Individual instruction, directed study, consultation, and comprehensive examination over coursework leading to the Master of Science degree in bioengineering. Required of all MS students.

BE 5300. SELECTED TOPICS IN BIOENGINEERING. 3 Hours.

Material may vary from semester to semester. May be repeated for credit if different topics are covered for each registration. Prerequisite: permission of the instructor.

BE 5301. CELL PHYSIOLOGY. 3 Hours.

This course will cover principles of molecular omics (i.e., genomics, transcriptomics, proteomics and synthetic biology). The field of Molecular bioengineering and processes involving inducible transcription and chimeric proteins. The composition of cell membranes, ion transport and the application of optogenetics in cell physiology regulation. The way cells communicate and integrate signals and translated them in intracellular metabolic cascades through the understanding of phosphoproteomicss, energy metabolism, metabolomics, cellular motility, and molecular motors. The processes involved in cell proliferation, abnormal cell division dysregulation in cancer, and nanotechnology techniques for tumor treatment. Prerequisite: Graduate Level or Instructor Permission.

BE 5309. HUMAN PHYSIOLOGY IN BIOENGINEERING. 3 Hours.

An introduction to human physiology emphasizing biomedical engineering related topics. The course focuses on understanding basic function with the relationships on the cellular as well as organ level both in healthy and diseased states.

BE 5310. BIOMECHANICS AND FLUID FLOW WITH COMPUTATIONAL LAB. 3 Hours.

Follow an introduction to the basics of solid, fluid mechanics, student learn the fundamental behavior of various biological materials, flow properties of blood, viscoelastic properties of cells, tissue matrix, as well as their roles in human physiology at normal and disease states. Examples also include the design aspects of medical prosthetic devices. The course will cover biomechanics across a wide range of scales from organism, organ, tissue, cell and to protein levels. Students learn computational modeling to formulate and solve bioengineering problems. Prerequisite: Undergraduate solid and fluid mechanics courses or consent of the instructor.

BE 5316. FUNDAMENTAL MATH AND PHYSICS FOR BIOENGINEERING. 3 Hours.

This course introduces the basic physics concepts such as introduction to electromagnetism, Maxwell's equations, computation of Fresnel coefficients, interference and diffraction of light, waveguides and optical fibers, photon counting statistics, and Beer-Lambert law. It also covers basic mathematical concepts such as curvilinear coordinates, vector calculus, Stokes theorem and solving differential equations with initial conditions and the diffusion equation.

BE 5323. INTRODUCTION TO BIOPHOTONICS. 3 Hours.

Introduction to properties of light, light-cell/tissue interactions, optical techniques, and optical instrumentation, in the context of biophotonic medical applications . Topics that will be covered include fundamental properties of optical wave fields, basic properties and characterization of laser sources and detectors used in modern biomedicine, interferometery, linear and nonlinear light-tissue interactions exploited for biomedical imaging and sensing applications, and spectroscopy.

BE 5324. BIOMEDICAL OPTICS LABORATORY. 3 Hours.

The primary objective of the Biomedical Optics Laboratory course is to provide students hands-on experience with fundamental optical techniques and instrumentation used in modern biomedical research and applications. The skills learned will be valuable to anyone who intends to work in an experimental setting that requires working knowledge of optical instrumentation and techniques. The course is divided into ten core lab modules that cover topics ranging from basic optical techniques to advanced imaging and spectroscopy techniques.

BE 5325. FLUORESCENCE MICROSCOPY. 3 Hours.

Introduction to the anatomy of a fluorescence microscope and the physical principles of its operation. Confocal and multi-photon microscopy. Molecular imaging applications based on Forster Resonance Energy Transfer (FRET), Fluorescence Lifetime Imaging (FLIM), Fluorescence Correlation Spectroscopy (FCS), Fluorescence Recovery After Photobleaching (FRAP) and Total Internal Reflection Fluorescence (TIRF) Microscopy.

BE 5326. TISSUE ULTRASOUND OPTICAL IMAGING. 3 Hours.

This course will introduce the fundamental principles of ultrasound and optical related imaging techniques, such as ultrasound, tissue optical, photo-acoustic and ultrasound-modulated optical imaging techniques. Lectures, laboratories, simulations, and paper presentations and discussion will be adopted in this course. Some topics related to the new progresses and applications in the related fields will be introduced. Prerequisite: Graduate level or instructor permission.

BE 5327. TISSUE OPTICS. 3 Hours.

Introduction to the science and technology behind tissue optical imaging systems and their design requirements for different clinical applications. Diffuse optical tomography, fluorescence tomography, bioluminescence tomography, multi-modality imaging.

BE 5329. NEURAL ENGINEERING. 3 Hours.

This course consists of both lecture/discussion and laboratory. Lecture topics include central and peripheral nervous system injury and regeneration, brain/machine interfacing, primary culture of neural cells, neuroinflammatory and neurodegenerative disease. Laboratories include embryonic and neonatal rat derived neuronal culturing, immunostaining and quantitative analysis.

BE 5331. POLYMERS IN BIOMEDICAL ENGINEERING. 3 Hours.

This is a foundation course in polymeric biomaterial design, synthesis, characterization, and processing. The topics include design, surface-engineering, functionalization, characterization, as well as micro- and nano-fabrication of polymeric biomaterials. The biomedical applications of the polymeric biomaterials and their interaction with cell/tissue is discussed.

BE 5333. NANOBIOMATERIALS. 3 Hours.

Synthesis, fabrication, characterization, and biomedical applications of nanobiomaterials. Topics include synthetic nanobiomaterials, biological nanobiomaterials (DNA nanomaterials, protein and peptide nanomaterials, etc.), biofunctionalization of nanobiomaterials, use of nanobiomaterials in tissue engineering, drug delivery, gene delivery.

BE 5335. BIOLOGICAL MATERIALS, MECHANICS, & PROCESSES. 3 Hours.

Typical functional behavior of various biological materials, flow properties of blood, bioviscoelastic fluids and solids, mass transfer in cardiovascular and pulmonary systems.

BE 5337. TRANSPORT PHENOMENA IN BIOMEDICAL ENGINEERING. 3 Hours.

Principles of momentum, mass and heat transfer; description of blood flow, trans-capillary, interstitial, lymphatic fluid transport and pulmonary gas exchange. Applications in the design of blood oxygenator, dialysis devices, and strategies in drug delivery, hyperthermia treatment. Prerequisite: undergraduate courses in CE 2312 Statics/Dynamics, MAE 2314 Fluid Mechanics I or CE 3305 and MAE 3310 Thermodynamics I or CHEM 3321.

BE 5340. FINITE ELEMENT APPLICATIONS IN BIOENGINEERING. 3 Hours.

The course describes the fundamental principles of the finite element method and various numerical modeling techniques. Topics include variational and Galerkin formulations, linear and Hermitian elements, accuracy and convergence. Applications in biological systems and to the design of prosthetic devices are emphasized. Topic areas include linear elasticity, fluid dynamics, heat transfer, and mass transport processes.

BE 5343. IMAGE PROCESSING WITH MATLAB: APPLICATIONS IN MEDICINE AND BIOLOGY. 3 Hours.

This course focuses on introduction to image processing for applications in medicine and biology. After a review of how to use MATLAB arrays, files, functions, and to write MATLAB programs for quantitative computation and graphing, students will learn the fundamental tools in image processing, image analysis, and two-dimensional Fourier transform, using MATLAB functions available in the textbook. Topics also include image segmentation. Real-world research-based examples will be presented, and discussed in the course. With hands-on exercises, students will learn the basic skills, knowledge on MATLAB usage and the problem-solving techniques required for medical image processing. Prerequisite: MATH 3319 or consent of the instructor.

BE 5344. BIOINSTRUMENTATION I. 3 Hours.

Fundamental principles of bioinstrumentation, including operational amplifiers and instrumentation amplifiers; measurements of biopotentials; signals and noise in biological systems; mechanical transducers; resistive, inductive, capacitive transducers; measurement of temperature, blood pressure and flow; electrical safety.

BE 5345. BIOSENSOR. 3 Hours.

The course will cover major classes of bio-sensing technologies currently used in practice and the emerging ones that are currently being evaluated. The basic operating principle behind bio-sensing technologies will be explained and its implementation in medical devices will be discussed. Explanation of biosensor operation will involve understanding the mechanism of bio-signal transduction (bio-parameter to biomechanical, electrical, optical or chemical signal), detection method, and their analysis. Methodology for device calibration and data interpretation of physiological parameters will be discussed. The course material will be derived from book chapters and review papers. Course includes hand-on learning experience in laboratory by deconstructing commercially available biosensors and using experimental bio-sensing instruments. Students will be required to design and implement a point-of-care biosensor. Prerequisite: Undergraduate instrumentation courses or consent of the instructor.

BE 5346. MEDICAL IMAGING. 3 Hours.

This course introduces basic medical imaging modalities, including X-ray Computed Tomography (CT), Nuclear Medicine Imaging (PET and SPECT), Magnetic Resonance Imaging (MRI), and image-guided interventions. Through this course, the students will learn fundamental knowledge on how medical images are obtained and how they can be used for diagnosis, therapy, and surgery.

BE 5347. PRINCIPLES OF FUNCTIONAL MAGNETIC RESONANCE IMAGING. 3 Hours.

This course introduces basic principles of Magnetic Resonance Imaging (MRI) and functional MRI (fMRI) for brain functional imaging. After taking this course, the students will gain basic knowledge on how functional brain images are obtained from MRI and fMRI as well as how they can be used for diagnosis, therapy, and surgery. The emphasis in this course is on fMRI . This course will include lecture and some laboratory exercises involving actual fMRI measurement data.

BE 5350. MODELING AND CONTROL OF BIOLOGICAL SYSTEMS. 3 Hours.

Introduction to fundamental methods of modeling, analysis and control of biological systems. Linear system modeling, state space modeling, stability analysis, basic identification techniques. Examples from cardiopulmonary, visual, and motor control systems. Prerequisite: an undergraduate course in linear systems, control theory, or consent of the instructor.

BE 5352. DIGITAL PROCESSING OF BIOLOGICAL SIGNALS. 3 Hours.

Fundamental techniques for extraction of useful information from signals acquired from biological systems. Topics include time and frequency domain analysis, cross correlation, spectrum analysis, and convolution. Design of FIR and IIR filters for processing biological signals are described. Examples include cardiac, respiratory, and biomechanical movements. Prerequisite: an undergraduate engineering course in signals and systems analysis or consent of the instructor.

BE 5360. DESIGN AND APPLICATION OF ARTIFICIAL ORGANS. 3 Hours.

Fundamental principles of fluid mechanics, mass transfer and chemical reaction in engineered biological systems. Simple solutions are developed for the design of artificial ventricular assist devices, total artificial hearts, lungs and kidneys.

BE 5361. BIOMATERIALS AND BLOOD COMPATIBILITY. 3 Hours.

This course is an introduction to polymer structure and fabrication methods. Blood and tissue interactions with materials, and methods to improve the biocompatibility of materials are discussed.

BE 5364. TISSUE ENGINEERING LECTURE. 3 Hours.

Fundamentals of cell/extracellular matrix interactions in terms of cell spreading, migration, proliferation and function. Soft and hard tissue wound healing and nerve regeneration. Polymer scaffolding materials and fabrication methods. Cell-polymer interactions. In vitro and in vivo tissue culture and organ replacement.

BE 5365. TISSUE ENGINEERING LAB. 3 Hours.

Each student will be given the opportunity to perform the techniques commonly used in tissue engineering and biomaterial research. These techniques are culture media preparation, cell culture/subculture, degradable scaffold preparation, scaffold modification, histological sections and staining, and cell imaging analyses.

BE 5366. PROCESS CONTROL IN BIOTECHNOLOGY. 3 Hours.

Principles and methods of measurement, data acquisition and analysis. Application of control theory in biological systems and in biotechnology processes; control of pressure, flow, temperature, and pH. Prerequisite: an undergraduate course in control theory or consent of the instructor.

BE 5370. BIOMATERIAL - LIVING SYSTEMS INTERACTION. 3 Hours.

This course describes current developments in molecular structure and organization at synthetic material interfaces with tissues and the subsequent influences on cells and cell membranes. It is designed to lay the groundwork for an improved understanding of events at the biomaterial-living system interface.

BE 5372. DRUG DELIVERY. 3 Hours.

This class focuses on the development, design and application of controlled and targeted drug delivery systems including transdermal, inhalation, drug eluting stents, stimulated-drug as well as microparticles and nanoparticles for controlled drug delivery. Principles of drug delivery, targeting, modification, distribution and diffusion will be discussed.

BE 5373. DRUG DELIVERY LAB. 3 Hours.

This class will provide the students with hands-on experience for developing drug delivery systems such as microparticles and nanoparticles that deliver pharmaceutical agents to treat various diseases. The emphasis is on understanding the principles of pharmacokinetics and drug delivery systems to improve the clinical efficacy and reduce side effects.

BE 5382. LABORATORY PRINCIPLES. 3 Hours.

Introduction to fundamental biomedical engineering laboratory procedures including human studies and animal surgery; includes clinical laboratory projects; data collection, analysis, and interpretation. Prerequisite: permission of the instructor.

BE 5385. STEM CELL TISSUE ENGINEERING. 3 Hours.

Students will gain experience and expertise in stem cell culture and differentiation, and engineering stem cell-based 2D and 3D tissue constructs. Using phenotypic markers and appropriately integrating with biocompatible scaffolds, the engineered tissue constructs will be differentiated to several tissue types and functionally validated. Lectures will cover stem cells, designing scaffolds and multimodal imaging techniques. The final projects may include acquisition of big data images, data mining and development of pattern recognition algorithms. Prerequisite: Consent of the instructor.

BE 5390. RESEARCH PROJECT. 3 Hours.

Taken by students enrolled in the non-thesis option for the MS degree. Individual instruction in research and/or instrumentation development and evaluation conducted under supervision of the instructor. A final report required. Graded P/F/R. Prerequisite: permission of the instructor.

BE 5391. DIRECTED RESEARCH IN BIOENGINEERING. 3 Hours.

Student participates in a research project under the individual instruction of a faculty supervisor.

BE 5398. THESIS. 3 Hours.

Prerequisite: graduate standing in biomedical engineering.

BE 5691. DIRECTED RESEARCH IN BIOENGINEERING. 6 Hours.

Student participates in a research project under the individual instruction of a faculty supervisor.

BE 5698. THESIS. 6 Hours.

Graded P/F/R. Prerequisite: graduate standing in biomedical engineering.

BE 6103. PhD SEMINAR IN BIOENGINEERING. 1 Hour.

This course serves as a forum to present recent scientific and technological topics in Bioengineering and as a a practical guide to organize and deliver proper and effective scientific oral presentations. Prerequisite: Ph.D. student status.

BE 6194. DOCTORAL DIAGNOSTIC EXAMINATION. 1 Hour.

Individual instruction, directed study, consultation, and diagnostic examination. Required of all doctoral students in the semester when they take any portion of the diagnostic examination.

BE 6195. DOCTORAL COMPREHENSIVE EXAMINATION. 1 Hour.

Individual instruction, directed study, consultation, and comprehensive examination on a detailed prospectus of proposed dissertation research as well as an oral examination. Required of all doctoral students in the semester when they take the comprehensive examination. Prerequisite: BE 6194.

BE 6197. RESEARCH IN BIOENGINEERING. 1 Hour.

Individually approved research projects leading to a doctoral dissertation in the area of biomedical engineering.

BE 6297. RESEARCH IN BIOENGINEERING. 2 Hours.

Individually approved research projects leading to a doctoral dissertation in the area of biomedical engineering.

BE 6395. INTERNSHIP IN BIOENGINEERING. 3 Hours.

Students receive training in a bioengineering company or a hospital to gain firsthand industrial or clinical engineering experience. The company or hospital assigns projects, and a faculty member monitors the student's progress. Students register for 3 (BE 6395), 6 (BE 6695), or 9 (BE 6995) credit hours. Prerequisite: Completion of at least 9 graduate credit hours in BE and good standing in the graduate program.

BE 6397. RESEARCH IN BIOENGINEERING. 3 Hours.

Individually approved research projects leading to a doctoral dissertation in the area of bioengineering.

BE 6399. DISSERTATION. 3 Hours.

Preparation and submission of a doctoral dissertation in an area of bioengineering. Graded R/F only. Prerequisite: admission to candidacy for the Ph.D. in Biomedical Engineering.

BE 6499. DISSERTATION. 4 Hours.

Preparation and submission of a doctoral dissertation in an area of bioengineering. This course is only to be taken by students preparing a dissertation for submission that is supervised primarily by a University of Texas Southwestern Medical School faculty member and must be taken concurrently with a 5-hour dissertation course at that institution. To satisfy requirement that a P be awarded in a 9-hour dissertation course in their final semester of enrollment, a student must be concurrently enrolled in this course and the 5-hour dissertation course at the University of Texas Southwestern Medical School and receive a P in both courses at the end of that semester. If a P is not awarded in both classes, the two classes must be repeated until P grades are concurrently awarded.

BE 6695. INTERNSHIP IN BIOENGINEERING. 6 Hours.

Students are placed with a bioengineering company or a hospital to gain firsthand industrial or clinical engineering experience. The company or hospital assigns projects, and a faculty member monitors the student's progress. Students register for 3 (BE 6395), 6 (BE 6695), or 9 (BE 6995) credit hours during each semester. Prerequisite: completion of at least 9 graduate credit hours in BE and good standing in the graduate program.

BE 6697. RESEARCH IN BIOENGINEERING. 6 Hours.

Individually approved research projects leading to a doctoral dissertation in the area of bioengineering.

BE 6699. DISSERTATION. 6 Hours.

Preparation and submission of a doctoral dissertation in an area of bioengineering. Graded R/F only. Prerequisite: admission to candidacy for the Ph.D. in Biomedical Engineering.

BE 6995. INTERNSHIP IN BIOENGINEERING. 9 Hours.

Students are placed with a bioengineering company or a hospital to gain firsthand industrial or clinical engineering experience. The company or hospital assigns projects, and a faculty member monitors the student's progress. Students register for 3 (BME 6395), 6 (BME 6695), or 9 (BME 6995) credit hours during each semester. Prerequisite: completion of at least 9 graduate credit hours in BE and good standing in the graduate program.

BE 6997. RESEARCH IN BIOENGINEERING. 9 Hours.

Individually approved research projects leading to a doctoral dissertation in the area of bioengineering.

BE 6999. DISSERTATION. 9 Hours.

Preparation and submission of a doctoral dissertation in an area of bioengineering. Graded P/R/F. Prerequisite: admission to candidacy for the Ph.D. in Biomedical Engineering.

BE 7399. DOCTORAL DEGREE COMPLETION. 3 Hours.

This course may be taken during the semester in which a student expects to complete all requirements for the doctoral degree and graduate. Enrolling in this course meets minimum enrollment requirements for graduation, for holding fellowships awarded by The Office of Graduate Studies and for full-time GTA or GRA positions. Students should verify that enrollment in this course meets other applicable enrollment requirements. To remain eligible in their final semester of study for grants, loans or other forms of financial aid administered by the Financial Aid Office must enroll in a minimum of 5 hours as required by the Office of Financial Aid. Other funding sources may also require more than 3-hours of enrollment. Additional hours may also be required to meet to requirements set by immigration law or by the policies of the student's degree program. Students should contact the Financial Aid Office, other sources of funding, Office of International Education and/or their graduate advisor to verify enrollment requirements before registering for this course. This course may only be taken once and may not be repeated. Students who do not complete all graduation requirements while enrolled in this course must enroll in a minimum of 6 dissertation hours (6699 or 6999) in their graduation term. Graded P/F/R.